Additional file 4: of West Nile virus infection and interferon alpha treatment alter the spectrum and the levels of coding and noncoding host RNAs secreted in extracellular vesicles
Fil: Slonchak, Andrii. University of Queensland; Australia.
| Main Authors: | , , , , , |
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| Format: | dataSet |
| Language: | eng |
| Published: |
National Health and Medical Research Council
2021
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| Subjects: | |
| Online Access: | https://hdl.handle.net/11086/20793 https://doi.org/10.6084/m9.figshare.8252099.v1 |
| _version_ | 1801214801685250048 |
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| author | Slonchak, Andrii Clarke, Brian Mackenzie, Jason Amarilla, Alberto Setoh, Yin Khromykh, Alexander |
| author_facet | Slonchak, Andrii Clarke, Brian Mackenzie, Jason Amarilla, Alberto Setoh, Yin Khromykh, Alexander |
| author_sort | Slonchak, Andrii |
| collection | Repositorio Digital Universitario |
| description | Fil: Slonchak, Andrii. University of Queensland; Australia. |
| format | dataSet |
| id | rdu-unc.20793 |
| institution | Universidad Nacional de Cordoba |
| language | eng |
| publishDate | 2021 |
| publisher | National Health and Medical Research Council |
| record_format | dspace |
| spelling | rdu-unc.207932023-09-05T21:36:39Z Additional file 4: of West Nile virus infection and interferon alpha treatment alter the spectrum and the levels of coding and noncoding host RNAs secreted in extracellular vesicles Archivo adicional 4: La infección por el virus del Nilo Occidental y el tratamiento con interferón alfa alteran el espectro y los niveles de los ARN codificantes y no codificantes del huésped secretados en vesículas extracelulares Slonchak, Andrii Clarke, Brian Mackenzie, Jason Amarilla, Alberto Setoh, Yin Khromykh, Alexander Extracellular vesicles Exosomes miRNA West Nile virus Flavivirus SnoRNA Noncoding RNA https://purl.org/becyt/ford/3.4 Fil: Slonchak, Andrii. University of Queensland; Australia. Fil: Clarke, Brian. Universidad de Arizona; Estados Unidos. Fil: Mackenzie, Jason. University of Queensland; Australia. Fil: Amarilla, Leonardo D. Universidad Nacional de Córdoba. Facultad de Ciencias Exactas, Físicas y Naturales; Argentina. Fil: Amarilla, Leonardo D. Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto Multidisciplinario de Biología Vegetal; Argentina. Fil: Setoh, Yin. University of Queensland; Australia. Fil: Khromykh, Alexander. University of Queensland; Australia. Table S1. EV miRNAs significantly (FDR<0.05, logFC>1) altered in response to WNV infection comparing to mock EVs. Table S2. EV miRNAs significantly (FDR<0.05, logFC>1) altered in response to IFN-alpha treatment comparing to mock EVs. Table S3. EV sncRNAs significantly (FDR<0.05, logFC>1) altered in response to WNV infection comparing to mock EVs. Table S4. EV sncRNAs significantly (FDR<0.05, logFC>1) altered in response to IFN-alpha treatment comparing to mock EVs. Table S5. EV mRNAs significantly (FDR<0.05, logFC>1) altered in response to WNV infection comparing to mock EVs. Table S6. EV mRNAs significantly (FDR<0.05, logFC>1) altered in response to IFN-alpha treatment comparing to mock EVs. Table S7. GO terms associated with mRNAs exhibiting decreased levels in EVs secreted by WNV infected A549 cells. Table S8. GO terms associated with mRNAs exhibiting decreased levels in EVs secreted by IFN-alpha treated A549 cell. Table S9. PCR primers used in the study. (XLSX 349 kb) Tabla S1. Los miRNAs de las VE se alteraron significativamente (FDR<0,05, logFC>1) en respuesta a la infección por el VNO en comparación con las VE de prueba. Tabla S2. MiRNAs de EV significativamente (FDR<0,05, logFC>1) alterados en respuesta al tratamiento con IFN-alfa en comparación con EVs de prueba. Tabla S3. Los sncRNAs de las VE alterados significativamente (FDR<0,05, logFC>1) en respuesta a la infección por el VNO en comparación con las VE de prueba. Tabla S4. Los sncRNAs de las VE alterados significativamente (FDR<0,05, logFC>1) en respuesta al tratamiento con IFN-alfa en comparación con las VE de prueba. Tabla S5. ARNm de las VE significativamente (FDR<0,05, logFC>1) alterados en respuesta a la infección por el VNO en comparación con las VE de prueba. Tabla S6. ARNm de EV significativamente (FDR<0,05, logFC>1) alterados en respuesta al tratamiento con IFN-alfa en comparación con EVs de prueba. Tabla S7. Términos GO asociados con los mRNAs que muestran niveles reducidos en las EVs secretadas por las células A549 infectadas por el VNO. Tabla S8. Términos GO asociados con los ARNm que muestran niveles reducidos en las VE secretadas por las células A549 tratadas con IFN-alfa. Tabla S9. Cebadores de PCR utilizados en el estudio. (XLSX 349 kb) Fil: Slonchak, Andrii. University of Queensland; Australia. Fil: Clarke, Brian. Universidad de Arizona; Estados Unidos. Fil: Mackenzie, Jason. University of Queensland; Australia. Fil: Amarilla, Leonardo D. Universidad Nacional de Córdoba. Facultad de Ciencias Exactas, Físicas y Naturales; Argentina. Fil: Amarilla, Leonardo D. Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto Multidisciplinario de Biología Vegetal; Argentina. Fil: Setoh, Yin. University of Queensland; Australia. Fil: Khromykh, Alexander. University of Queensland; Australia. 2021-10-12T21:45:58Z 2021-10-12T21:45:58Z 2019-06-10 dataSet Slonchak, Andrii; Clarke, Brian; Mackenzie, Jason; Amarilla, Alberto; Setoh, Yin; Khromykh, Alexander (2019): Additional file 4: of West Nile virus infection and interferon alpha treatment alter the spectrum and the levels of coding and noncoding host RNAs secreted in extracellular vesicles. figshare. Dataset. https://doi.org/10.6084/m9.figshare.8252099.v1 https://hdl.handle.net/11086/20793 https://doi.org/10.6084/m9.figshare.8252099.v1 eng info:eu-repo/semantics/reference/url/https://figshare.com/articles/dataset/Additional_file_4_of_West_Nile_virus_infection_and_interferon_alpha_treatment_alter_the_spectrum_and_the_levels_of_coding_and_noncoding_host_RNAs_secreted_in_extracellular_vesicles/8252099 info:eu-repo/semantics/dataset/https:/doi/10.6084/m9.figshare.8252099.v1 Atribución-NoComercial-CompartirIgual 4.0 Internacional http://creativecommons.org/licenses/by-nc-sa/4.0/ National Health and Medical Research Council |
| spellingShingle | Extracellular vesicles Exosomes miRNA West Nile virus Flavivirus SnoRNA Noncoding RNA https://purl.org/becyt/ford/3.4 Slonchak, Andrii Clarke, Brian Mackenzie, Jason Amarilla, Alberto Setoh, Yin Khromykh, Alexander Additional file 4: of West Nile virus infection and interferon alpha treatment alter the spectrum and the levels of coding and noncoding host RNAs secreted in extracellular vesicles |
| title | Additional file 4: of West Nile virus infection and interferon alpha treatment alter the spectrum and the levels of coding and noncoding host RNAs secreted in extracellular vesicles |
| title_full | Additional file 4: of West Nile virus infection and interferon alpha treatment alter the spectrum and the levels of coding and noncoding host RNAs secreted in extracellular vesicles |
| title_fullStr | Additional file 4: of West Nile virus infection and interferon alpha treatment alter the spectrum and the levels of coding and noncoding host RNAs secreted in extracellular vesicles |
| title_full_unstemmed | Additional file 4: of West Nile virus infection and interferon alpha treatment alter the spectrum and the levels of coding and noncoding host RNAs secreted in extracellular vesicles |
| title_short | Additional file 4: of West Nile virus infection and interferon alpha treatment alter the spectrum and the levels of coding and noncoding host RNAs secreted in extracellular vesicles |
| title_sort | additional file 4 of west nile virus infection and interferon alpha treatment alter the spectrum and the levels of coding and noncoding host rnas secreted in extracellular vesicles |
| topic | Extracellular vesicles Exosomes miRNA West Nile virus Flavivirus SnoRNA Noncoding RNA https://purl.org/becyt/ford/3.4 |
| url | https://hdl.handle.net/11086/20793 https://doi.org/10.6084/m9.figshare.8252099.v1 |
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